Other presentations presented by S. Jonic unless stated otherwise

 


 

 

(oral, 2023) Workshop "Artificial intelligence and electron microscopy - State of the art and perspectives" [Link]

Paris, France, May 23, 2023

Deep Learning methods development for Cryo Electron Microscopy studies of biomolecular conformational dynamics

 

(oral selected from posters, 2022) Gordon Research Conference on Three Dimensional Electron Microscopy

Castelldefels, Spain, June 19-24, 2022

Methods for conformational variability analysis in cryo-ET subtomograms and their use in nucleosome studies

              Harastani, M., Eltsov M, Leforestier A, and Jonic, S.

(by M. Harastani)

 

(poster, 2022) Gordon Research Conference on Three Dimensional Electron Microscopy

Castelldefels, Spain, June 19-24, 2022

DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images

              Hamitouche, I and Jonic, S.

(by I. Hamitouche)

 

 

(oral, 2021) 4th International Conference on Bio-engineering for Smart Technologies (BioSMART ) 2021

Paris, France. December 8 – 10, 2021

Comparison Between HEMNMA-3D and Traditional Classification Techniques for Analyzing Biomolecular Continuous Shape Variability in Cryo Electron Subtomograms

              Harastani, M., Eltsov M, Leforestier A, and Jonic, S.

(by M. Harastani)

 

(oral, 2021) BioImage Informatics 2021 (Institute Pasteur)

Virtual. November 29 – December 1, 2021

Continuous conformational variability of macromolecules in cryogenic subtomograms based on 3D dense optical flow (TomoFlow), and its application to a case study of nucleosomes in situ

              Harastani, M., Eltsov M, Leforestier A, and Jonic, S.

(by M. Harastani)

 

(oral, 2021) 29th European Signal Processing Conference, EUSIPCO 2021

Virtual. August 23-27, 2021

Combined Bayesian and normal mode flexible fitting with Hamiltonian Monte Carlo sampling for cryo electron microscopy

              Vuillemot, R., and Jonic, S.

(by R. Vuillemot)

 

(poster, 2021) 29th European Signal Processing Conference, EUSIPCO 2021

Virtual. August 23-27, 2021

Deep learning of elastic 3D shapes for cryo electron microscopy analysis of continuous conformational changes of biomolecules

              Hamitouche, I and Jonic, S.

(by I. Hamitouche)

 

(oral, 2021) 17ème Congrès de la Société Française de Microscopies

Virtual. July 5-9, 2021

A hybrid approach to analyze continuous conformational variability of single particles based on deep learning

              Hamitouche, I and Jonic, S.

(by I. Hamitouche)

 

(poster, 2021) 17ème Congrès de la Société Française de Microscopies

Virtual. July 5-9, 2021

Combined Hamiltonian Monte Carlo and Normal Mode Flexible Fitting

              Vuillemot, R and Jonic, S.

(by R. Vuillemot)

 

(oral, 2021) 17ème Congrès de la Société Française de Microscopies

Virtual. July 5-9, 2021

HEMNMA-3D: a new method for continuous conformational variability analysis of macromolecules. Application to cryo electron tomography of nucleosomes in situ

              Harastani, M., Eltsov M, Leforestier A, and Jonic, S.

(by M. Harastani)

 

(poster, 2020, virtual) In situ Structural Biology: From Cryo−EM to Integrative Modelling

EMBL Heidelberg, Germany. December 6−8, 2020

Development of a cryo-ET data analysis approach to study continuous conformational changes of biomolecules

             Harastani, M., Eltsov, M., Leforestier, A.,  and Jonic, S.

(by M. Harastani)

 

(poster, 2019) 16ème Congrès de la Société Française de Microscopies

Poitiers, France. July 2-5, 2019

Development of a cryo-ET data analysis approach to study continuous conformational changes of biomolecules

              Harastani, M. and Jonic, S.

 

(poster, 2018) Princeton - Nature Conference: Frontiers in Electron Microscopy for the Physical and Life Sciences

Princeton University, Princeton, NJ, USA, July 11-13, 2018

 Insulin-induced cristae formation via UCP1 in rat brown adipocytes mitochondria

Korac, A., Golic, I., Jonic, S., and Korac, B.

(by A. Korac)

 

(poster, 2017) Gordon Research Conference on Three Dimensional Electron Microscopy

Les Diablerets, Switzerland, June 11-16, 2017

 A neural network approach to predict macromolecular conformations in a continuous conformational space from single particle images

Jonic, S.

 

(poster, 2016) 2nd International Symposium on Cryo-EM 3D Image Analysis

Lake Tahoe, California, USA, March 30-April 2, 2016

StructMap: Elastic distance analysis of electron microscopy maps for studying conformational changes

Sorzano, C. O. S., Alvarez-Cabrera, A. L., Kazemi, M., Carazo, J. M., and Jonic, S.

 

(poster, 2015) 14ème Congrès de la Société Française de Microscopies

Nice, France. June 30-July 3, 2015

- (poster) StructMap: Method for mapping a set of electron-microscopy structures onto a space defined by their distances

Sorzano, C. O. S., Alvarez-Cabrera, A. L., Carazo, J. M., and Jonic, S.

 

(poster, 2015) Gordon Research Conference on Three Dimensional Electron Microscopy

Colby−Sawyer College, New London, NH, USA, June 21-26, 2015

- StructMap: Multivariate distance analysis of elastically aligned electron microscopy structures for exploring pathways of conformational changes

Sorzano, C. O. S., Alvarez-Cabrera, A. L., Carazo, J. M., and Jonic, S.

 

(poster/oral, 2014) 18th European Bioenergetics Conference

Lisbon, Portugal, July 12−17, 2014

Insulin induces cristae remodeling by decreasing complex I and increasing UCP1 expression in rat brown adipose tissue

Golic, I., Markelic, M., Velickovic, K., Jankovic, A., Stancic, A., Vucetic, M., Otasevic, V., Buzadzic, B., Korac, B., Jonic, S., and Korac, A

(by I. Golic)

 

(poster, 2014) Gordon Research Conference on Three Dimensional Electron Microscopy

Girona, Spain, June 22-27, 2014

HEMNMA: Hybrid Electron Microscopy Normal Mode Analysis to fully explore continuous-type conformational changes

Q. Jin, C. O. S. Sorzano, J.M. Delarosa−Trevin, J.R.Bilbao−Castro, R. Núñez−Ramírez, O. Llorca, F. Tama, and S. Jonic

 

(poster, 2014) Cryo-EM 3D Image Analysis Symposium

Lake Tahoe, California, USA, March 12-15, 2014

HEMNMA: Hybrid Electron Microscopy Normal Mode Analysis to fully explore macromolecular dynamics

Q. Jin, C. O. S. Sorzano, J.M. Delarosa−Trevin, J.R.Bilbao−Castro, R. Núñez−Ramírez, O. Llorca, F. Tama, and S. Jonic

 

(poster, 2013) Gordon Research Conference on Three Dimensional Electron Microscopy

Colby−Sawyer College, New London, NH, USA, June 23−28, 2013

Normal mode analysis for electron microscopy revitalized

Q. Jin, C. O. S. Sorzano, J.M. Delarosa−Trevin, J.R.Bilbao−Castro, R. Núñez−Ramírez, O. Llorca, F. Tama, and S. Jonic

 

(poster, 2011) Gordon Research Conference on 3D Electron Microscopy

Colby-Sawyer College, New London, NH, USA. June 26-July 1, 2011

Filming molecules in action using transmission electron microscopy: Novel image analysis method for studying conformational changes in 4D

S. Jonic, C. O. S. Sorzano, and F. Tama

 

(3 posters and 1 oral, 2009) 11ème Congrès de la Société Française de Microscopies

Paris, France. June 22-26, 2009

- (poster) A hybrid method coupling normal mode analysis with projection matching to study structural flexibility of macromolecular assemblies

S. Jonic, C.O.S. Sorzano, F. Tama, E. Larquet, and N. Boisset

- (poster) New insights into the structure and function of rabbit skeletal muscle Phosphorylase Kinase

C. Carrière, S. Jonic, E. Larquet, J.-P. Mornon, C. Venien-Bryan, I. Callebaut, and N. Boisset

(by I. Callebaut)

- (oral) The structure of Phosphorylase Kinase holoenzyme at subnanometer resolution, location of the catalytic subunit and the substrate glycogen phosphorylase

S. Jonic, E. Larquet , V. Skamnaki , N. Oikonomakos, N. Boisset, L. Johnson, and C. Vénien-Bryan

(by C. Vénien-Bryan)

- (poster) Initiation de la Traduction chez les Archaea : Etude du Complexe de Pre-Initiation par Cryomicroscopie Electronique

Z. Devaux, S. Jonic, L. Cladière, J.M. Guigner, Y. Méchulam, E. Larquet, and E. Schmitt

(by Z. Devaux)

 

(2 posters, 2009) Final Meeting of the Network of Excellence 3DEM

Brdo, Slovenia. February 9-13, 2009

- A hybrid method coupling normal mode analysis with projection matching to study structural flexibility of macromolecular assemblies

S. Jonic, C.O.S. Sorzano, F. Tama, E. Larquet, and N. Boisset,

- New insights on the structure and function of rabbit skeletal muscle Phosphorylase Kinase

C. Carrière, S. Jonic, E. Larquet, V. Skamnaki, L. Johnson, J.-P. Mornon, I. Callebaut, C.  Venien-Bryan, and N. Boisset

 

(3 posters, 2008) 14th European Microscopy Congress - EMC

Aachen, Germany, September 1-5, 2008

- Structural and functional studies of rabbit skeletal muscle Phosphorylase Kinase

S. Jonic, C. Carrière, E. Larquet, V. Skamnaki, L. Johnson, C. Venien-Bryan, J.-P. Mornon, I. Callebaut, and N. Boisset

- Sequence analysis and modelling of the two large subunits of Phosphorylase Kinase

C. Carrière, J.-P. Mornon,  S. Jonic, E. Larquet, C. Venien-Bryan, N. Boisset, and I. Callebaut

(by C. Carrière)

- Architecture of bacterial glutamate synthase complexe using hybrid approaches

M. Cottevieille, E. Larquet, S. Jonic, I. Callebaut, D. Svergun, M.A. Vanoni, and N. Boisset

(by E. Larquet)

 

(poster, 2008) Gordon Research Conference on Three Dimensional Electron Microscopy

Il Ciocco, Italy, June 15-20, 2008

A hybrid method coupling normal mode analysis with projection matching to study structural flexibility of macromolecular assemblies

S. Jonic, C.O.S. Sorzano, F. Tama, E. Larquet, and N. Boisset

 

(2 posters, 2008) 4th Annual Meeting of the Network of Excellence 3DEM

Schloss Marbach, Germany, January 28-30, 2008

- Enhanced diffractograms for image sorting and improvement of robustness and accuracy of CTF estimation

S. Jonic, C.O.S. Sorzano, E. Larquet, C. Vénien-Bryan, J.M. Carazo, and N. Boisset

- Progress on structural and functional studies of rabbit skeletal muscle Phosphorylase Kinase

C. Carrière, S. Jonic, E. Larquet, C. Venien-Bryan, J.-P. Mornon, I. Callebaut, and N. Boisset

(by C. Carrière)

 

(poster, 2007) 3rd Serbian Congress for Microscopy

Belgrade, Serbia, September 25-28, 2007

3D reconstruction of macromolecular assemblies at subnanometric resolution

M. Cottevieille, S. Jonic, C.O.S. Sorzano, E. Larquet, and N. Boisset

 

(poster, 2007) Gordon Research Conference on Three Dimensional Electron Microscopy

Colby-Sawyer College, New London, NH, USA, June 24-29, 2007

Enhanced diffractograms for image sorting and improvement of robustness and accuracy of CTF estimation: Application on high-resolution reconstruction of glutamate synthase and phosphorylase kinase

S. Jonic, C.O.S. Sorzano, M. Cottevieille, E. Larquet, C. Vénien-Bryan, and N. Boisset

 

(2 posters, 2007) 3rd Annual Meeting of the Network of Excellence 3DEM

Palma Mallorca, Spain, January 23-25, 2007

- Enhanced diffractogram improves robustness and accuracy of determination of contrast transfer function of transmission electron microscope

S. Jonic, C.O.S. Sorzano, R. Nuñez, J.M. Carazo, and N. Boisset

- Application of molecular modeling, SAXS, and 3D-cryo-EM to Azospirillum brazilense glutamate synthase multi-enzymatic complex

M. Cottevieille, C. Carrière, S. Jonic, E. Larquet, I. Callebaut, M.A. Vanoni, D. Svergun, and N. Boisset

(by N. Boisset)

 

(3 posters and 1 oral, 2006) 20ème Congrès de la Société Française de Biophysique

Anglet, France, October 14-19, 2006

- (poster) Nouvelle approche de visualisation et tri des diffractogrammes de cryo-MET basé sur l’anisotropie

S. Jonic, C.O.S. Sorzano, M. Cottevieille, E. Larquet, and N. Boisset

- (poster) Etude structurale de la phosphorylase kinase (PhK) de mammifère par cryo-MET 3D et analyse d’images

N. Bischler, S. Jonic, E. Larquet, N. Oikonomakos, V. Skamnaki, L. Johnson, C. Vénien-Bryan, and N. Boisset

(by N. Boisset)

- (oral) Architecture du complexe glutamate synthase à 9.5 Å de résolution par cryomicroscopie électronique 3D, modélisation par homologie et diffusion des rayons X aux petits angles

M. Cottevieille, E. Larquet, S. Jonic, M.V. Petoukhov, L. Dossena, D.I. Svergun, M.A. Vanoni, and N. Boisset

(by M. Cottevieille)

- (poster) Mise en évidence d'une conformation intermédiaire de l'alpha 2-macroglobuline humaine par cryo-MET et reconstruction 3D

T. Le Berre, M. Cottevieille, S. Jonic, E. Larquet, and N. Boisset

(by E. Larquet)

 

(poster/oral, 2006) 16th International Microscopy Congress

Sapporo, Japon, September 3-8, 2006

Hybrid approach for studying the architecture of bacterial glutalate synthase complexe using cryo-electron microscopy, SAXS, X-ray cristallography, and homology modeling

M. Cottevieille, L. Dossena, S. Jonic, E. Larquet, M.V. Petoukhov, D. Svergun, M.A. Vanoni, and N. Boisset

(by N. Boisset)

 

(poster/oral, 2006) 3rd International Workshop on Biomedical Image Registration (WBIR'06)

Utrecht, Netherlands, July 9-11, 2006

Point similarity measures based on MRF modeling of difference images for spline-based 2D-3D rigid registration of X-ray fluoroscopy to CT images

G. Zheng, X. Zhang, S. Jonic, P. Thévenaz, M. Unser, and L.-P. Nolte

(by G. Zheng)

 

(3 posters, 2006) Gordon Research Conference on Three Dimensional Electron Microscopy

Il Ciocco, Italy, June 25-30, 2006

- Improvement of visibility of diffraction rings for sorting micrographs and their local areas

S. Jonic, C.O.S. Sorzano, M. Cottevieille, E. Larquet, and N. Boisset

- Three-dimensional structure of phosphorylase kinase at 10 Å resolution, localisation of individual subunits

N. Bischler, S. Jonic, V. Skamnaki, N. Oikonomakos, L. Johnson, N. Boisset, and C. Vénien-Bryan

(by C. Vénien-Bryan)

- Architecture of bacterial glutamate synthase complexe using hybrid approaches

M. Cottevieille, L. Dossena, S. Jonic, E. Larquet, M.V. Petoukhov, D. Svergun, M.A. Vanoni, and N. Boisset

(by N. Boisset)

 

(oral, 2006) Trends in Enzymology, Como, Italy, June 7-10, 2006

Architecture of bacterial glutamate synthase studied by SAXS, 3D cryo-electron microscopy, and homology modelling

Cottevieille M, Jonic S, Larquet E, Petoukhov MV, Dossena L, Svergun D, Vanoni MA, and Boisset N

(by N. Boisset)

 

(3 posters, 2006) 2nd Annual Meeting of the Network of Excellence 3DEM

Klosters, Switzerland, January 11-14, 2006

- Classification of cryo-EM frames and local areas based on their power spectra

S. Jonic, C.O.S. Sorzano, M. Cottevieille, E. Larquet, and N. Boisset

- Structural study of bacterial glutamate synthase complex by 3D cryo-electron microscopy, homology modelling, and small-angle X-ray scattering

M. Cottevieille, E. Larquet, S. Jonic, M.V. Petoukhov, L. Dossena, D.I. Svergun, M.A. Vanoni, and N. Boisset

(by N. Boisset)

- Coupling 3D cryo-electron microscopy with structure modeling at the atomic level: Hydrophobic cluster analysis as a tool for the identification of templates and their accurate alignments

I. Callebaut, R. Aramayo, C. Carrière, S. Jonic, E. Larquet, F. Mouche, F. Skouri-Panet, J.P. Mornon, and N. Boisset

(by I. Callebaut)

 

(poster/oral, 2005) 15th IUPAB and EBSA International Biophysics Congress

Montpellier, France, August 27 – September 1, 2005

Structural study of bacterial glutamate synthase complex by 3D cryo-electron microscopy, homology modelling, and small-angle X-ray scattering

M. Cottevieille, E. Larquet, S. Jonic, M.V. Petoukhov, L. Dossena, D.I. Svergun, M. A. Vanoni, and N. Boisset

(by M. Cottevieille/N. Boisset)

 

(poster/oral, 2005) 9ème Colloque de la Société Française des Microscopies

Caen, France, July 4-8, 2005

Étude structurale du complexe glutamate synthase par cryomicroscopie électronique 3D, modélisation comparative et diffusion des rayons X aux petits angles

M. Cottevieille, E. Larquet, S. Jonic, M.V. Petoukhov, L. Dossena, D.I. Svergun, M.A. Vanoni, and N. Boisset

(by M. Cottevieille/N. Boisset)

 

(poster, 2005) Gordon Research conference on Three-dimensional cryoelectron microscopy

Colby-Sawyer College, New Hampton, NH, USA, 2005

Structural study of bacterial glutamate synthase complex through combined use of protein engineering, small-angle X-ray scattering, and 3D cryo-electron microscopy

M. Cottevieille, S. Jonic, E. Larquet, M.V. Petoukhov, L. Dossena, D.I. Svergun, M.A. Vanoni, and N. Boisset

(by N. Boisset)

 

(oral, 2005) 2nd Symposium on Imaging for Medical and Life Sciences (IMVIE2)

Illkirch, France, March 1-3, 2005

Spline-based approach to orientation assignment for three-dimensional electron microscopy

S. Jonic, C.O.S. Sorzano, P. Thévenaz, M. Unser, and N. Boisset

 

(poster/oral, 2004) 13th European Microscopy Congress, 2004

Volumetric spectral signal-to-noise ratio

C.O.S. Sorzano, S. Jonic, C. El-Bez, S. De Carlo, P. Thévenaz, J. Conway, B.L. Trus, M. Unser

(by C.O.S. Sorzano)

 

(poster, 2003) SPIE International Symposium on Medical Imaging: Image Processing (MI'03)

San Diego CA, USA, February 17-20, 2003

Multiresolution-based registration of a volume to a set of its projections

S. Jonic, P. Thévenaz, and M. Unser

 

(poster, 2001) SPIE International Symposium on Medical Imaging: Image Processing (MI'01)

San Diego CA, USA, February 17-22, 2001

Multiresolution spline-based 3D/2D registration of CT volume and C-arm images for computer-assisted surgery

S. Jonic, P. Thévenaz, and M. Unser

 

(oral, 1998) 3rd International Information Technology Conference - IT’98 (conference now sponsored by IEEE Link)

Zabljak, Serbia, March 1998

Radial basis function neural networks for determining synergies between joint angles in locomotion

S. Jonic, D. Popovic, and S. Obradovic

 

(oral and poster, 1997) 4th International Symposium on Neural Networks and Applications - NEUREL’97 (organized by IEEE Yugoslavia Section, now IEEE Serbia and Montenegro Link)

Belgrade, Serbia, September 8-9, 1997

(poster) Rule-based controller for locomotion - Use of radial basis function ANN

S. Jonic and D. Popovic

(oral) Identification of one-dimensional biomedical signals: Supervised machine learning techniques

D. Popovic and S. Jonic

(by D. Popovic)

 

(oral, 1997) 2nd International Information Technology Conference - IT’97 (conference now sponsored by IEEE Link)

Zabljak, Serbia, March 1997

Simulation of optimal control of walking

S. Jonic and D. Popovic

 

 

Slavica Jonic    Modified 06/05/2023